Unleashing chemical power from protein sequence space toward genetically encoded "click" chemistry
- Corresponding author: Sun Fei, kefsun@ust.hk Zhang Wen-Bin, wenbin@pku.edu.cn
Citation:
Sun Fei, Zhang Wen-Bin. Unleashing chemical power from protein sequence space toward genetically encoded "click" chemistry[J]. Chinese Chemical Letters,
;2017, 28(11): 2078-2084.
doi:
10.1016/j.cclet.2017.08.052
H.C. Kolb, M.G. Finn, K.B. Sharpless, Angew. Chem. Int. Ed. 40(2001) 2004-2021.
doi: 10.1002/(ISSN)1521-3773
C. Barner-Kowollik, F.E. Du Prez, P. Espeel, et al., Angew. Chem. Int. Ed. 50(2011) 60-62.
doi: 10.1002/anie.v50.1
H.J. Kang, F. Coulibaly, F. Clow, T. Proft, E.N. Baker, Science 318(2007) 1625-1628.
doi: 10.1126/science.1145806
B. Zakeri, M. Howarth, J. Am. Chem. Soc. 132(2010) 4526-4527.
doi: 10.1021/ja910795a
B. Zakeri, J.O. Fierer, E. Celik, et al., Proc.Natl. Acad. Sci. U. S. A.109(2012) E690-E697.
doi: 10.1073/pnas.1115485109
L.L. Tan, S.S. Hoon, F.T. Wong, PLoS One 11(2016) e0165074.
doi: 10.1371/journal.pone.0165074
G. Veggiani, T. Nakamura, M.D. Brenner, et al., Proc. Natl. Acad. Sci. U. S. A. 113(2016) 1202-1207.
doi: 10.1073/pnas.1519214113
G. Veggiani, B. Zakeri, M. Howarth, Trends Biotechnol. 32(2014) 506-512.
doi: 10.1016/j.tibtech.2014.08.001
S.C. Reddington, M. Howarth, Curr. Opin. Chem. Biol. 29(2015) 94-99.
doi: 10.1016/j.cbpa.2015.10.002
M. Proschel, R. Detsch, A.R. Boccaccini, U. Sonnewald, Front Bioeng. Biotechnol. 3(2015) 168.
B. Zakeri, ChemBioChem 16(2015) 2277-2282.
doi: 10.1002/cbic.v16.16
C.N. Bedbrook, M. Kato, S. Ravindra Kumar, et al., Chem. Biol. 22(2015) 1108-1121.
doi: 10.1016/j.chembiol.2015.06.020
H. Moon, Y. Bae, H. Kim, S. Kang, Chem. Commun. 52(2016) 14051-14054.
doi: 10.1039/C6CC07363H
V. Pessino, Y.R. Citron, S. Feng, B. Huang, ChemBioChem 18(2017) 1492-1495.
doi: 10.1002/cbic.v18.15
P.G. Young, Y. Yosaatmadja, P.W.R. Harris, et al., Chem. Commun. 53(2017) 1502-1505.
doi: 10.1039/C6CC09899A
N.H. Shah, T.W. Muir, Chem. Sci. 5(2014) 446-461.
doi: 10.1039/C3SC52951G
M. Schmidt, A. Toplak, P.J. Quaedflieg, T. Nuijens, Curr. Opin. Chem. Biol. 38(2017) 1-7.
W.B. Zhang, F. Sun, D.A. Tirrell, F.H. Arnold, J. Am. Chem. Soc.135(2013) 13988-13997.
doi: 10.1021/ja4076452
C. Schoene, J.O. Fierer, S.P. Bennett, M. Howarth, Angew. Chem. Int. Ed. 53(2014) 6101-6104.
doi: 10.1002/anie.201402519
C.S. McKay, M.G. Finn, Chem. Biol. 21(2014) 1075-1101.
doi: 10.1016/j.chembiol.2014.09.002
F. Sun, W.B. Zhang, A. Mahdavi, F.H. Arnold, D.A. Tirrell, Proc. Natl. Acad. Sci. U. S. A. 111(2014) 11269-11274.
doi: 10.1073/pnas.1401291111
Y. Liu, D. Liu, W. Yang, et al., Chem. Sci. 8(2017) 6577-6582.
doi: 10.1039/C7SC02686B
U. Schwarz-Linek, M.J. Banfield, Proc. Natl. Acad. Sci. U. S. A. 111(2014) 1229-1230.
doi: 10.1073/pnas.1322482111
C. Schoene, J.O. Fierer, S.P. Bennett, M. Howarth, Angew. Chem. Int. Ed. 53(2014) 6101-6104.
doi: 10.1002/anie.201402519
C. Schoene, S.P. Bennett, M. Howarth, Sci. Rep. 6(2016) 21151.
doi: 10.1038/srep21151
M. Si, Q. Xu, L. Jiang, H. Huang, PLoS One 11(2016) e0162318.
doi: 10.1371/journal.pone.0162318
J.D. Wang, Y.L. Wang, X.Z. Wang, et al., Biotechnol. Biofuels 9(2016) 79.
doi: 10.1186/s13068-016-0490-5
D. Liu, W.H. Wu, Y.J. Liu, et al., ACS Cent. Sci. 3(2017) 473-481.
doi: 10.1021/acscentsci.7b00104
X.W. Wang, W.B. Zhang, Angew. Chem. Int. Ed. 55(2016) 3442-3446.
doi: 10.1002/anie.201511640
D.D. Zhang, Z. Cai, J. Wang, et al., Sci. Sin. Chim. 46(2016) 881-890.
X.Y. Gao, J. Fang, B. Xue, L.L. Fu, H.B. Li, Biomacromolecules 17(2016) 2812-2819.
doi: 10.1021/acs.biomac.6b00566
Y. Cao, D. Liu, W. Zhang, Chem. Commun. 53(2017) 8830-8833.
doi: 10.1039/C7CC04507G
H. Kwon, P.G. Young, C.J. Squire, E.N. Baker, Sci. Rep. 7(2017) 42753.
doi: 10.1038/srep42753
R. Wang, Z. Yang, J. Luo, I.M. Hsing, F. Sun, Proc.Natl. Acad.Sci. U. S. A.114(2017) 5912-5917.
doi: 10.1073/pnas.1621350114
W.B. Zhang, S.Z.D. Cheng, Chin. J. Polym. Sci. 33(2015) 797-814.
doi: 10.1007/s10118-015-1653-8
W.B. Zhang, X. Yu, C.L. Wang, et al., Macromolecules 47(2014) 1221-1239.
doi: 10.1021/ma401724p
W.B. Zhang, X.M. Wang, X.W. Wang, et al., Prog. Chem. 27(2015) 1333-1342.
J.A. Burdick, W.L. Murphy, Nat. Commun. 3(2012) 1269.
doi: 10.1038/ncomms2271
W.B. Zhang, X.L. Wu, G.Z. Yin, Y. Shao, S.Z.D. Cheng, Mater. Horiz. 4(2017) 117-132.
doi: 10.1039/C6MH00448B
G.Z. Yin, W.B. Zhang, S.Z.D. Cheng, Sci. China Chem. 60(2017) 338-352.
doi: 10.1007/s11426-016-0436-x
W.B. Zhang, E.Q. Chen, J. Wang, et al., Acta Phys. Sin. 65(2016) 183601.
R.H. Crabtree, Science 266(1994) 1591-1592.
doi: 10.1126/science.266.5190.1591
M. Fairhead, G. Veggiani, M. Lever, et al., J. Am. Chem. Soc. 136(2014) 12355-12363.
doi: 10.1021/ja505584f
K.D. Brune, C.M. Buldun, Y.Y. Li, et al., Bioconjug. Chem. 28(2017) 1544-1551.
doi: 10.1021/acs.bioconjchem.7b00174
R. Langer, D.A. Tirrell, Nature 428(2004) 487-492.
doi: 10.1038/nature02388
R.J. Kutta, S.J. Hardman, L.O. Johannissen, et al., Nat. Commun. 6(2015) 7907.
doi: 10.1038/ncomms8907
M. Jost, J. Fernandez-Zapata, M.C. Polanco, et al., Nature 526(2015) 536-541.
doi: 10.1038/nature14950
J.M. Ortiz-Guerrero, M.C. Polanco, F.J. Murillo, S. Padmanabhan, M. EliasArnanz, Proc. Natl. Acad. Sci. U. S. A. 108(2011) 7565-7570.
doi: 10.1073/pnas.1018972108
M. Jost, J.H. Simpson, C.L. Drennan, Biochemistry 54(2015) 3231-3234.
doi: 10.1021/acs.biochem.5b00416
Z.D. Liu, H. Zhou, W.J. Wang, et al., Sci. Rep. 4(2014) 7266.
K.D. Brune, D.B. Leneghan, I.J. Brian, et al., Sci. Rep. 6(2016) 19234.
doi: 10.1038/srep19234
S. Thrane, C.M. Janitzek, S. Matondo, et al., J. Nanobiotechnol. 14(2016) 30.
doi: 10.1186/s12951-016-0181-1
C.M. Janitzek, S. Matondo, S. Thrane, et al., Malar. J. 15(2016) 545.
doi: 10.1186/s12936-016-1574-1
S.K. Singh, S. Thrane, C.M. Janitzek, et al., Vaccine 35(2017) 3726-3732.
doi: 10.1016/j.vaccine.2017.05.054
D.B. Leneghan, K. Miura, I.J. Taylor, et al., Sci. Rep. 7(2017) 3811.
doi: 10.1038/s41598-017-03798-3
C.A. Kerfeld, S. Heinhorst, G.C. Cannon, Annu. Rev. Microbiol. 64(2010) 391-408.
doi: 10.1146/annurev.micro.112408.134211
T.W. Giessen, P.A. Silver, ChemBioChem 17(2016) 1931-1935.
doi: 10.1002/cbic.v17.20
N.J. Alves, K.B. Turner, M.A. Daniele, et al., ACS Appl. Mater. Interface 7(2015) 24963-24972.
doi: 10.1021/acsami.5b08811
P.B. Stranges, M. Palla, S. Kalachikov, et al., Proc. Natl. Acad. Sci. U. S. A. 113(2016) E6749-E6756.
doi: 10.1073/pnas.1608271113
H.H. Wang, B. Altun, K. Nwe, A. Tsourkas, Angew. Chem. Int. Ed. 56(2017) 5349-5352.
doi: 10.1002/anie.201701419
Guoying Han , Qazi Mohammad Junaid , Xiao Feng . Topology-driven directed synthesis of metal-organic frameworks. Chinese Journal of Structural Chemistry, 2025, 44(3): 100447-100447. doi: 10.1016/j.cjsc.2024.100447
Lulu DONG , Jie LIU , Hua YANG , Yupei FU , Hongli LIU , Xiaoli CHEN , Huali CUI , Lin LIU , Jijiang WANG . Synthesis, crystal structure, and fluorescence properties of Cd-based complex with pcu topology. Chinese Journal of Inorganic Chemistry, 2025, 41(4): 809-820. doi: 10.11862/CJIC.20240171
Wenbi Wu , Yinchu Dong , Haofan Liu , Xuebing Jiang , Li Li , Yi Zhang , Maling Gou . Modification of plasma protein for bioprinting via photopolymerization. Chinese Chemical Letters, 2024, 35(8): 109260-. doi: 10.1016/j.cclet.2023.109260
Yixin Zhang , Ting Wang , Jixiang Zhang , Pengyu Lu , Neng Shi , Liqiang Zhang , Weiran Zhu , Nongyue He . Formation mechanism for stable system of nanoparticle/protein corona and phospholipid membrane. Chinese Chemical Letters, 2024, 35(4): 108619-. doi: 10.1016/j.cclet.2023.108619
Mingqi Wang , Shixin Fa , Jiate Yu , Guoxian Zhang , Yi Yan , Qing Liu , Qiuyu Zhang . Light-controlled protein imprinted nanospheres with variable recognition specificity. Chinese Chemical Letters, 2025, 36(2): 110124-. doi: 10.1016/j.cclet.2024.110124
Ying Li , Long-Jie Wang , Yong-Kang Zhou , Jun Liang , Bin Xiao , Ji-Shen Zheng . An improved installation of 2-hydroxy-4-methoxybenzyl (iHmb) method for chemical protein synthesis. Chinese Chemical Letters, 2024, 35(5): 109033-. doi: 10.1016/j.cclet.2023.109033
Si Ha , Jiacheng Zhu , Hua Xiang , Guoshun Luo . Hydrophobic tag tethering degrader as a promising paradigm of protein degradation: Past, present and future perspectives. Chinese Chemical Letters, 2024, 35(8): 109192-. doi: 10.1016/j.cclet.2023.109192
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Bo Liu , Shuaiqiang Shao , Junjie Cai , Zijian Zhang , Feng Tian , Kun Yang , Fan Li . Signal cascade amplification of streptavidin-biotin-modified immunofluorescence nanocapsules for ultrasensitive detection of glial fibrillary acidic protein. Chinese Chemical Letters, 2025, 36(3): 109814-. doi: 10.1016/j.cclet.2024.109814
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