Citation:
Zhang Suge, Sun Hongxia, Tang Yalin. Research Progress in the Probes Targeting DNA G-quadruplex[J]. Chemistry,
;2016, 79(5): 387-394.
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G-quadruplexes are non-canonical secondary DNA/RNA structure formed by guanine-rich oligonucleotide sequences, which widely exist in eukaryotic genomes, such as telomeric DNA, rDNA, and promoter regions of oncogenes. G-quadruplex structure may play a pivotal role in the control of a variety of cellar processes including telomere maintenance, replication, transcription, and translation. Detection of the quadruplex structures using the probes with high specificity and sensitivity will help us to explore the distribution, function, and mechanism of G-quadruplexes in human cells, and may also provide new diagnostic and therapeutic approaches of cancer via targeting G-quadruplex. In the last two decades, various targeting G-quadruplex probes which have high selectivity and sensitivity have been designed, and these probes have been used to recognize different G-quadruplex topologies in solutions. A few probes have also been applied to recognize G-quadruplex in vivo. This article reviews the typical probes targeting G-quadruplexes as well as their application in detection G-quadruplexes in chromosome and cell level. Authors hope this paper can provide a certain reference for design of G-quadruplex-targeting probes and further realization of G-quadruplex detection in living cells.
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-
-
[1]
[1] (a) M Frank-Kamenetskii. Nature, 1989, 342:737; (b) M Frank-Kamenetskii. Nature,1992, 356: 105~105.
-
[2]
[2] J L Huppert, S Balasubramanian. Nucl. Acids Res., 2005, 33: 2908~2916.
-
[3]
[3] (a) F Aboul-ela, A I H Murchie, D M J Lilley. Nature, 1992, 360: 280~282; (b) Y Wang, D J Patel. Biochemistry, 1992, 31:8112~8119.
-
[4]
[4] (a) L Malinina, R E Brown. Structure, 2015, 23:1371~1372; (b) A Kettani, S Bouaziz, A Gorin et al. J. Mol. Biol. 1998, 282:619~636.
-
[5]
[5] Y Wang, D J Patel. Structure, 1994, 2:1141~1156.
-
[6]
[6] J T Davis. Angew. Chem. Int. Ed., 2004, 43:668~698.
-
[7]
[7] A K Todd, M Johnston, S Neidle. Nucl. Acids Res., 2005, 33:2901~2907.
-
[8]
[8] (a) T Simonsson, M Kubista, P Pecinka. Nucl. Acids Res., 1998, 26: 1167~1172; (b) A Siddiqui-Jain, C L Grand, D J Bearss et al. PNAS, 2002, 99:11593~11598; (c) S Lyonnais, C Hounsou, M P Teulade-Fichou et al. Nucl. Acids Res., 2002, 30: 5276~5283.
-
[9]
[9] D Sun, K Guo, J J Rusche et al. Nucl. Acids Res., 2005, 33: 6070~6080.
-
[10]
[10] (a) S Cogoi, M Paramasivam, V Filichev et al. J.Med. Chem., 2009, 52:564~568; (b) S Cogoi, L E Xodo. Nucl. Acids Res., 2006, 34: 2536~2549.
-
[11]
[11] (a) J Dai, T S Dexheimer, D Chen et al. J. Am. Chem. Soc., 2006, 128: 1096~1098; (b) T S Dexheimer, D Sun, L H Hurley. J. Am. Chem. Soc., 2006, 128: 5404~5415.
-
[12]
[12] (a) S Rankin, A P Reszka, J Huppert et al. J. Am. Chem. Soc., 2005, 127:10584~10589; (b) A T Phan, V Kuryavyi, S Burge et al. J. Am. Chem. Soc., 2007, 129:4386~4392; (c) D J Patel, A T Phan, V Kuryavyi. Nucl. Acids Res., 2007, 35:7429~7455.
-
[13]
[13] E M Rezler, Y Qin, L H Hurley. Clin. Cancer Res., 2003, 9:6124S.
-
[14]
[14] (a) K Paeschke, T Simonsson, J Postberg et al. Nat. Struct. Mol. Biol., 2005, 12: 847~854; (b) N Maizels. Nat. Struct. Mol. Biol., 2006, 13: 1055~1059; (c) D Sen, W Gilbert. Nature, 1988, 334: 364~366.
-
[15]
[15] T A Brooks, S Kendrick, L Hurley. FEBS J., 2010, 277: 3459~3469.
-
[16]
[16] P Murat, S Balasubramanian. Curr. Opin. Genet. Dev., 2014, 25: 22~29.
-
[17]
[17] R Rodriguez, S Müller, J A Yeoman et al. J. Am. Chem. Soc., 2008, 130: 15758~15759.
-
[18]
[18] E Largy, A Granzhan, F Hamon et al. Quadruplex Nucl. Acids, 2013, 330:111~177.
-
[19]
[19] F Koeppel, J F Riou, A Laoui et al. Nucl. Acids Res., 2001, 29: 1087~1096.
-
[20]
[20] (a) C C Chang, J Y Wu, C W Chien et al. Anal. Chem., 2003, 75: 6177~6183; (b) C C Chang, I C Kuo, I F Ling et al. Anal. Chem., 2004, 76:4490~4494.
-
[21]
[21] P Yang, A de Cian, M P Teulade-Fichou et al.Angew. Chem. Int. Ed., 2009, 48:2188~2191.
-
[22]
[22] J W Yan, W J Ye, S B Chen et al. Anal. Chem., 2012, 84: 6288~6292.
-
[23]
[23] Y J Lu, S C Yan, F Y Chan et al. Chem. Commun., 2011, 47: 4971~4973.
-
[24]
[24] J W Yan, S B Chen, H Y Liu et al. Chem, Commun., 2014, 50: 6927~6930.
-
[25]
[25] M Tera, K Iida, K Ikebukuro et al. Org. Biomol. Chem., 2010, 8: 2749~2755.
-
[26]
[26] (a) Q Yang, J Xiang, S Yang et al. Chem. Commun., 2009: 1103~1105; (b) Q Yang, J Xiang, S Yang et al. Nucl. Acids Res., 2010, 38:1022~1033.
-
[27]
[27] B Jin, X Zhang, W Zheng et al. Anal. Chem., 2014, 86: 7063~7070.
-
[28]
[28] B Jin, X Zhang, W Zheng et al. Anal. Chem., 2014, 86:943~952.
-
[29]
[29] M Nikan, M di Antonio, K Abecassis et al. Angew. Chem. Int. Ed., 2013, 52:1428~1431.
-
[30]
[30] M Gajhede, T N Petersen, A Henriksen et al. Structure, 1993, 1: 253~262.
-
[31]
[31] C C Chang, J F Chu, F J Kao et al. Anal. Chem., 2006, 78: 2810~2815.
-
[32]
[32] W Gai, Q Yang, J Xiang et al. Analyst, 2013, 138:798~804.
-
[33]
[33] E Y Lam, D Beraldi, D Tannahill et al. Nat. Commun., 2013, 4: 1796.
-
[34]
[34] (a) N D Hastie, M Dempster, M G Dunlop et al. Nature, 1990, 346: 866~868; (b) A J Bateman. Nature, 1975, 253:379~389.
-
[35]
[35] C Granotier, G Pennarun, L Riou et al. Nucl. Acids Res., 2005, 33: 4182~4190.
-
[36]
[36] G Biffi, D Tannahill, J McCafferty et al. Nat. Chem., 2013, 5: 182~186.
-
[37]
[37] A Henderson, Y Wu, Y C Huang et al. Nucl. Acids Res., 2014, 42: 860~869.
-
[38]
[38] A Shivalingam, M A Izquierdo, A Le Marois et al. Nat. Commun., 2015, 6:8178.
-
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