Citation: Hui FENG, Chang-Jun FENG, Jing-Pei CAO. Study on the Biological Activity of 3-Aroyl-5-substituted Thiophene Derivatives Based on the CoMFA Method[J]. Chinese Journal of Structural Chemistry, ;2020, 39(11): 1978-1984. doi: 10.14102/j.cnki.0254–5861.2011–2703 shu

Study on the Biological Activity of 3-Aroyl-5-substituted Thiophene Derivatives Based on the CoMFA Method

  • Corresponding author: Jing-Pei CAO, caojingpei@cumt.edu.cn
  • Received Date: 17 December 2019
    Accepted Date: 17 February 2020

    Fund Project: the National Natural Science Foundation of China 21676292the National Natural Science Foundation of China 21075138special fund of State Key Laboratory of Structure Chemistry 2016028

Figures(3)

  • A three-dimensional quantitative structure-activity relationship (3D-QSAR) study was conducted to analyze the A1AR density (Bmax) of 56 3-aroyl-5-substituted thiophene derivatives (ASTDs) in human A1 Chinese hamster ovary (hA1CHO) membranes by the comparative molecular field analysis (CoMFA) method. A training set of 45 compounds was used to establish the predictive model, which was verified by the test set of 17 compounds containing template molecule and 5 newly designed molecules. The cross-validation (Rcv2) and non-cross-validation (R2) coefficients of the training set were 0.655 and 0.959, respectively. The model was used to predict the activities of the compounds of the training and test sets, and the results indicated that the models had strong stability and good prediction ability. According to model analysis, the contribution of steric and electrostatic fields was 51.4% and 48.6%, respectively. Based on the 3D contour maps, five excellent ASTDs agonists were designed, which need to be further verified by biomedical experiments.
  • 加载中
    1. [1]

      Ke, Y. R.; Jin, H. W; Liu, Z. M.; Zhang, L. R. Homology modeling and structure validation of the adenosine A1 receptor. Acta Phys. -Chim. Sin. 2010, 26, 2833–2839.  doi: 10.3866/PKU.WHXB20100916

    2. [2]

      Romagnoli, R.; Baraldi, P. G.; Carrion, M. D.; Cruz-Lopez, O.; Cara, C. L.; Saponaro, G.; Preti, D.; Tabrizi, M. A.; Baraldi, S.; Moorman, A. R.; Vincenzi, F.; Borea, P. A.; Varani, K. Synthesis and biological evaluation of novel 2-amino-3-aroyl-4-neopentyl-5-substituted thiophene derivatives as allosteric enhancers of the A1 adenosine receptor. Bioorgan. Med. Chem. 2014, 22, 148–166.  doi: 10.1016/j.bmc.2013.11.043

    3. [3]

      Feng, C. J. Quantitative Structure-efficacy Relationship and Its Applications. China University of Mining and Technology Press, Xuzhou 2017, p1–26.

    4. [4]

      Wang, C.; Feng, C. J. QSAR study of the action strength of DOM of phenyl-isopropyl-amine dopes using MLR and BP-ANN. Chin. J. Struct. Chem. 2017, 36, 1720–1728.

    5. [5]

      Wang, C.; Feng, C. J. QSAR studies on the inhibitory activity of levofloxacin-thiadiazole HDACi conjugates to histone deacetylases. Chin. J. Struct. Chem. 2018, 37, 1679–1688.

    6. [6]

      Zheng, S. S.; Li, T. T.; Wang, J.; Hu, Y. J.; Zhang, H. X.; Zhao, S. X.; Zhao, Y. H.; Li, C. QSAR models for predicting the aqueous reaction rate constants of aromatic compounds with hydrated electrons. Environ. Chem. 2019, 38, 1005–1013.

    7. [7]

      Qu, R. J.; Liu, H. X.; Feng, M. B.; Yang, X.; Wang, Z. Y. Investigation on intramolecular hydrogen bond and some thermodynamic properties of polyhydroxylated anthraquinones. J. Chem. Eng. Data 2012, 57, 2442–2455.  doi: 10.1021/je300407g

    8. [8]

      Yang, F.; Wang, M.; Wang, Z. Y. Sorption behavior of 17 phthalic acid esters on three soils: effects of pH and dissolved organic matter, sorption coefficient measurement and QSPR study. Chemosphere 2013, 93, 82–89.  doi: 10.1016/j.chemosphere.2013.04.081

    9. [9]

      Feng, C. J. QSAR studies on the biological activity of substituted triazolo-benzothiazole derivatives. J. Xuzhou Inst. Tech. (Nat. Sci. Ed. ) 2018, 33, 39–44.

    10. [10]

      Feng, H.; Feng C. J. 3D-QSAR studies on the anti-tumor activity of N-aryl-salicylamide derivatives. Chin. J. Struct. Chem. 2019, 38, 1874–1880.

    11. [11]

      Tong, J. B.; Qin, S. S.; Lei, S.; Wang, Y. A 3D-QSAR study of HIV-1 integrase inhibitors using RASMS and topomer CoMFA. Chin. J. Struct. Chem. 2019, 38, 867–881.

    12. [12]

      Shu, M.; Wu, T.; Wang, B. W.; Li, J.; Xu, C. M.; Lin, Z. H. 3D-QSAR and surflex docking studies of a series of alkaline phosphatase inhibitors. Chin. J. Struct. Chem. 2019, 38, 7–16.

    13. [13]

      Tong, J. B.; Wang, Y.; Lei, S.; Qin, S. S. 3D-QSAR and docking studies of 1, 3, 4-thiazolidinone derivatives using R-group search and surflex-dock. Chin. J. Struct. Chem. 2019, 38, 464–475.

    14. [14]

      Tong, J. B.; Wang, Y.; Lei, S.; Qin, S. S. Comprehensive 3D-QSAR and binding mode of DAPY inhibitors using R-group search and molecular docking. Chin. J. Struct. Chem. 2019, 38, 25–36.

    15. [15]

      An, C. H.; Shu, M.; Zai, X. L.; Zhang, B. N.; Li, J.; Chang, Z. C.; Hu, Y.; Lin, Z. H. Combined 3D-QSAR, pharmacophore and docking studies on benzene-sulfonamide derivatives as potent 12-lipoxygenase inhibitors. Lett. Drug Des. Discov. 2017, 14, 74–82.

    16. [16]

      Tong, J.; Zhan, P.; Bai, M.; Yao, T. Molecular modeling studies of human immunodeficiency virus type 1 protease inhibitors using three-dimensional quantitative structure-activity relationship, virtual screening, and docking simulations. J. Chemometrics 2016, 30, 523–536.  doi: 10.1002/cem.2809

    17. [17]

      Liu, H. X.; Shi, J. Q.; Liu, H.; Wang, Z. Y. Improved 3D-QSPR analysis of the predictive octanol-air partition coefficients of hydroxylated and methoxylated polybrominated diphenyl ethers. Atmos. Environ. 2013, 77, 840–845.  doi: 10.1016/j.atmosenv.2013.05.068

    18. [18]

      Wang, X. Y.; Duan, W. G.; Lin, G. S.; Kang, G. Q.; Shang, M. H.; Lei, F. H. Synthesis and antifungal activity of (Z)-/(E)-verbenone oxime ether compounds. Chem. Ind. Forest Prod. 2019, 39, 27–34.
       

    19. [19]

      Baraldi, P. G.; Borea, P. A.; Bergonzoni, M.; Cacciari, B.; Ongini, E.; Recanatini, M.; Spalluto, G. Comparative molecular field analysis (CoMFA) of a series of selective adenosine receptor A2A antagonists. Drug Dev. Res. 1999, 46, 126–133.  doi: 10.1002/(SICI)1098-2299(199902)46:2<126::AID-DDR5>3.0.CO;2-7

    20. [20]

      Feng, C. J. CoMFA model of herbicidal activity of phenyl-sulfonylured derivatives. J. Xuzhou Inst. Tech. (Nat. Sci. Ed. ) 2019, 34, 21–25.

    21. [21]

      Joshi, S. D.; More, U. A.; Aminabhavi, T. M.; Badiger, A. M. Two-and three-dimensional QSAR studies on a set of antimycobacterial pyrroles: CoMFA, Topomer CoMFA, and HQSAR. Med. Chem. Res. 2014, 23, 107–126.

    22. [22]

      Cramer, R. D.; Patterson, D. E.; Bunce, J. D. Comparative molecular field analysis (CoMFA). 1. Effect of shape on binding of steroids to carrier proteins. J. Am. Chem. Soc. 1988, 110, 5959−5967.

    23. [23]

      Clark, M.; Cramer, R. D.; Jones, D. M.; Patterson, D. E.; Simeroth, P. E. Comparative molecular field analysis (CoMFA). 2. Toward its use with 3D-structural databases. Tetrahedron Comput. Methodol. 1990, 3, 47–59.

    24. [24]

      Cramer, R. D.; Burce J. D.; Patterson D. E.; Frank, I. E. Cross-validation, boot strapping, and partial least squares compared with multiple regression in conventional QSAR study. Quant. Struct. -Act. Relat. 1988, 7, 18–25.

  • 加载中
    1. [1]

      Yuhang Li Yang Ling Yanhang Ma . Application of three-dimensional electron diffraction in structure determination of zeolites. Chinese Journal of Structural Chemistry, 2024, 43(4): 100237-100237. doi: 10.1016/j.cjsc.2024.100237

    2. [2]

      Yifan LIUZhan ZHANGRongmei ZHUZiming QIUHuan PANG . A three-dimensional flower-like Cu-based composite and its low-temperature calcination derivatives for efficient oxygen evolution reaction. Chinese Journal of Inorganic Chemistry, 2024, 40(5): 979-990. doi: 10.11862/CJIC.20240008

    3. [3]

      Kaimin WANGXiong GUNa DENGHongmei YUYanqin YEYulu MA . Synthesis, structure, fluorescence properties, and Hirshfeld surface analysis of three Zn(Ⅱ)/Cu(Ⅱ) complexes based on 5-(dimethylamino) isophthalic acid. Chinese Journal of Inorganic Chemistry, 2024, 40(7): 1397-1408. doi: 10.11862/CJIC.20240009

    4. [4]

      Runze Liu Yankai Bian Weili Dai . Qualitative and quantitative analysis of Brønsted and Lewis acid sites in zeolites: A combined probe-assisted 1H MAS NMR and NH3-TPD investigation. Chinese Journal of Structural Chemistry, 2024, 43(4): 100250-100250. doi: 10.1016/j.cjsc.2024.100250

    5. [5]

      Wenhao ChenMuxuan WuHan ChenLue MoYirong Zhu . Cu2Se@C thin film with three-dimensional braided structure as a cathode material for enhanced Cu2+ storage. Chinese Chemical Letters, 2024, 35(5): 108698-. doi: 10.1016/j.cclet.2023.108698

    6. [6]

      Hui GuMingyue GaoKuan ShenTianli ZhangJunhao ZhangXiangjun ZhengXingmei GuoYuanjun LiuFu CaoHongxing GuQinghong KongShenglin Xiong . F127 assisted fabrication of Ge/rGO/CNTs nanocomposites with three-dimensional network structure for efficient lithium storage. Chinese Chemical Letters, 2024, 35(9): 109273-. doi: 10.1016/j.cclet.2023.109273

    7. [7]

      Chao Ma Peng Guo Zhongmin Liu . DNL-16: A new zeolitic layered silicate unraveled by three-dimensional electron diffraction. Chinese Journal of Structural Chemistry, 2024, 43(4): 100235-100235. doi: 10.1016/j.cjsc.2024.100235

    8. [8]

      Shiyu HouMaolin SunLiming CaoChaoming LiangJiaxin YangXinggui ZhouJinxing YeRuihua Cheng . Computational fluid dynamics simulation and experimental study on mixing performance of a three-dimensional circular cyclone-type microreactor. Chinese Chemical Letters, 2024, 35(4): 108761-. doi: 10.1016/j.cclet.2023.108761

    9. [9]

      Honglin Gao Chunlin Yuan Hongyu Chen Aiyi Dong Pan Gao Guangjin Hou . Surface gallium hydride on Ga2O3 polymorphs: A comparative solid-state NMR study. Chinese Journal of Structural Chemistry, 2025, 44(4): 100561-100561. doi: 10.1016/j.cjsc.2025.100561

    10. [10]

      Bairu MengZongji ZhuoHan YuSining TaoZixuan ChenErik De ClercqChristophe PannecouqueDongwei KangPeng ZhanXinyong Liu . Design, synthesis, and biological evaluation of benzo[4,5]thieno[2,3-d]pyrimidine derivatives as novel HIV-1 NNRTIs. Chinese Chemical Letters, 2024, 35(6): 108827-. doi: 10.1016/j.cclet.2023.108827

    11. [11]

      Zhaodong WANGIn situ synthesis, crystal structure, and magnetic characterization of a trinuclear copper complex based on a multi-substituted imidazo[1,5-a]pyrazine scaffold. Chinese Journal of Inorganic Chemistry, 2025, 41(3): 597-604. doi: 10.11862/CJIC.20240268

    12. [12]

      Yu HongYuqian JiangChenhuan YuanDecai WangYimeng SunJian Jiang . Unraveling temperature-dependent supramolecular polymorphism of naphthalimide-substituted benzene-1,3,5-tricarboxamide derivatives. Chinese Chemical Letters, 2024, 35(12): 109909-. doi: 10.1016/j.cclet.2024.109909

    13. [13]

      Jian SongShenghui WangQiuge LiuXiao WangShuo YuanHongmin LiuSaiyang ZhangN-Benzyl arylamide derivatives as novel and potent tubulin polymerization inhibitors against gastric cancers: Design, structure–activity relationships and biological evaluations. Chinese Chemical Letters, 2025, 36(2): 109678-. doi: 10.1016/j.cclet.2024.109678

    14. [14]

      Gangsheng LiXiang YuanFu LiuZhihua LiuXujie WangYuanyuan LiuYanmin ChenTingting WangYanan YangPeicheng Zhang . Three-step synthesis of flavanostilbenes with a 2-cyclohepten-1-one core by Cu-mediated [5 + 2] cycloaddition/decarboxylation cascade. Chinese Chemical Letters, 2025, 36(2): 109880-. doi: 10.1016/j.cclet.2024.109880

    15. [15]

      Shudi YuJie LiJiongting YinWanyu LiangYangping ZhangTianpeng LiuMengyun HuYong WangZhengying WuYuefan ZhangYukou Du . Built-in electric field and core-shell structure of the reconstructed sulfide heterojunction accelerated water splitting. Chinese Chemical Letters, 2024, 35(12): 110068-. doi: 10.1016/j.cclet.2024.110068

    16. [16]

      Qingyun HuWei WangJunyuan LuHe ZhuQi LiuYang RenHong WangJian Hui . High-throughput screening of high energy density LiMn1-xFexPO4 via active learning. Chinese Chemical Letters, 2025, 36(2): 110344-. doi: 10.1016/j.cclet.2024.110344

    17. [17]

      Ao SunZipeng LiShuchun LiXiangbao MengZhongtang LiZhongjun Li . Stereoselective synthesis of α-3-deoxy-D-manno-oct-2-ulosonic acid (α-Kdo) derivatives using a C3-p-tolylthio-substituted Kdo fluoride donor. Chinese Chemical Letters, 2025, 36(3): 109972-. doi: 10.1016/j.cclet.2024.109972

    18. [18]

      Jian WangBaohui WangPin MaYifei ZhangHonghong GongBiyun PengSen LiangYunchuan XieHailong Wang . Regulation of uniformity and electric field distribution achieved highly energy storage performance in PVDF-based nanocomposites via continuous gradient structure. Chinese Chemical Letters, 2025, 36(4): 109714-. doi: 10.1016/j.cclet.2024.109714

    19. [19]

      Jiao ChenZihan ZhangGuojin SunYudi ChengAihua WuZefan WangWenwen JiangFulin ChenXiuying XieJianli Li . Benzo[4,5]imidazo[1,2-a]pyrimidine-based structure-inherent targeting fluorescent sensor for imaging lysosomal viscosity and diagnosis of lysosomal storage disorders. Chinese Chemical Letters, 2024, 35(11): 110050-. doi: 10.1016/j.cclet.2024.110050

    20. [20]

      Maitri BhattacharjeeRekha Boruah SmritiR. N. Dutta PurkayasthaWaldemar ManiukiewiczShubhamoy ChowdhuryDebasish MaitiTamanna Akhtar . Synthesis, structural characterization, bio-activity, and density functional theory calculation on Cu(Ⅱ) complexes with hydrazone-based Schiff base ligands. Chinese Journal of Inorganic Chemistry, 2024, 40(7): 1409-1422. doi: 10.11862/CJIC.20240007

Metrics
  • PDF Downloads(1)
  • Abstract views(284)
  • HTML views(6)

通讯作者: 陈斌, bchen63@163.com
  • 1. 

    沈阳化工大学材料科学与工程学院 沈阳 110142

  1. 本站搜索
  2. 百度学术搜索
  3. 万方数据库搜索
  4. CNKI搜索
Address:Zhongguancun North First Street 2,100190 Beijing, PR China Tel: +86-010-82449177-888
Powered By info@rhhz.net

/

DownLoad:  Full-Size Img  PowerPoint
Return