Citation:
HOU Shuhua, JI Debin, LIU Wujun, WANG Lei. Effect of Site-Directed Mutagenesis in Coenzyme-Binding Domain of Malic Enzyme on Coenzyme Activities for Nicotinamide Adenine Dinucleotide Analogs[J]. Chinese Journal of Applied Chemistry,
;2016, 33(4): 436-441.
doi:
10.11944/j.issn.1000-0518.2016.04.150268
-
The cofactor-binding domains of malic enzyme(ME) L310, Q401 and L404 were found to have a steric effect on binding of nicotinamide adenine dinucleotide(NAD+). The site-directed mutagenesis of these three sites shows that the cofactor activities of NAD+ analogs(B1~B7) change in some level, indicating that these sites have a critical role in binding the cofactors. A high-throughput screen between malic enzyme mutants and NAD+ analogs affords 2 different mutants capable of taking NAD+ analogs as the cofactor. ME-Q401H/L404T has a 50-fold higher kcat/Km than the that of wild-type ME for the analog B4. For ME-L310M/Q401N, the kcat/Km are 16-fold and 5-fold higher than those of wild-type ME for the cofactors B4 and B3. The coenzyme activity can be increased through site-directed mutagenesis of cofactor-binding domains.
-
Keywords:
- malic enzyme,
- site-directed mutagenesis,
- coenzyme activity
-
-
-
[1]
[1] Pollak N,Dolle C,Ziegler M. The Power to Reduce:Pyridine Nucleotides-Small Molecules with a Multitude of Functions[J]. Biochem J,2007,402(2):205-218.
-
[2]
[2] Huisman G W,Liang J,Krebber A. Practical Chiral Alcohol Manufacture Using Ketoreductases[J]. Curr Opin Chem Biol,2010,14(2):122-129.
-
[3]
[3] Koszelewski D,Lavandera I,Clay D,et al. Formal Asymmetric Biocatalytic Reductive Amination[J]. Angew Chem Int Ed,2008,47(48):9337-9340.
-
[4]
[4] Liese A,Filho M. Production of fine Chemicals Using Biocatalysis[J]. Curr Opin Biotechnol,1999,10(6):595-603
-
[5]
[5] Hummel W. Large-scale Applications of NAD(P)-Dependent Oxidoreductases: Recent Developments[J]. Trends Biotechnol,1999,17(12):487-492.
-
[6]
[6] Gamenara D,Domínguez de María P. Candida spp. Redox Machineries:An Ample Biocatalytic Platform for Practical Applications and Academic Insights[J]. Biotechnol Adv,2009,27(14):278-285.
-
[7]
[7] JI Debin,WANG Lei,ZHOU Yongjin,et al. Oxidative Decarboxylation of L-Malate by Using a Synthetic Bioredox System[J]. Chinese J Catal,2012,33(51):530-535(in Chinese).纪德彬,王磊,周雍进,等. 利用人工氧还酶体系催化L-苹果酸酶氧化脱羧反应[J]. 催化学报,2012,33(51):530-535.
-
[8]
[8] Strohmeier G,Pichler H,May O,et al. Application of Designed Enzymes in Organic Synthesis[J]. Chem Rev,2011,111(7):4141-4164.
-
[9]
[9] Nobeli I,Favia A,Thornton J. Protein Promiscuity and Its Implications for Biotechnology[J]. Nat Biotechnol,2009,27(2):157-167.
-
[10]
[10] Peregrina J,Herguedas B,Hermoso J,et al. Protein Motifs Involved in Coenzyme Interaction and Enzymatic Efficiency in Anabaena Ferredoxin-NADP+ Reductase[J]. Biochemistry,2009,48(14):3109-3119.
-
[11]
[11] Ji D,Wang L,Hou S,et al. Creation of Bioorthogonal Redox Systems Depending on Nicotinamide Flucytosine Dinucleotide[J]. J Am Chem Soc,2011,133(51):20857-20862.
-
[12]
[12] Ji D,Wang L,Liu W,et al. Synthesis of NAD Analogs to Develop Bioorthogonal Redox System[J]. Sci China Chem,2013,56(3):296-300.
-
[13]
[13] Woodyer R,Donk W,Zhao H. Relaxing the Nicotinamide Cofactor Specificity of Phosphite Dehydrogenase by Rational Design[J]. Biochemistry,2003,42(40):11604-11614.
-
[14]
[14] Aktas D,Cook P. Role of Residues in the Adenosine Binding Site of NAD of the Ascaris Suum Malic Enzyme[J]. Biochim Biophys Acta,2008,1784(12):2059-2064.
-
[15]
[15] Hou S,Liu W,Ji D,et al. Synthesis of 1,2,3-Triazole Moiety-Containing NAD Analogs and Their Potential as Redox Cofactors[J]. Tetrahedron Lett,2011,52(44):5855-5857.
-
[16]
[16] Wang J,Zhang S,Tan H,et al. PCR-based Strategy for Construction of Multi-Site-Saturation Mutagenic Expression Library[J]. J Microbiol Meth,2007,71(3):225-230.
-
[1]
-
-
-
[1]
Quanliang Chen , Zhaohui Zhou . Research on the Active Site of Nitrogenase over Fifty Years. University Chemistry, 2024, 39(7): 287-293. doi: 10.3866/PKU.DXHX202310133
-
[2]
Chunmei GUO , Weihan YIN , Jingyi SHI , Jianhang ZHAO , Ying CHEN , Quli FAN . Facile construction and peroxidase-like activity of single-atom platinum nanozyme. Chinese Journal of Inorganic Chemistry, 2024, 40(9): 1633-1639. doi: 10.11862/CJIC.20240162
-
[3]
Xinyi Hong , Tailing Xue , Zhou Xu , Enrong Xie , Mingkai Wu , Qingqing Wang , Lina Wu . Non-Site-Specific Fluorescent Labeling of Proteins as a Chemical Biology Experiment. University Chemistry, 2024, 39(4): 351-360. doi: 10.3866/PKU.DXHX202310010
-
[4]
Ying Zhang , Fang Ge , Zhimin Luo . AI-Driven Biochemical Teaching Research: Predicting the Functional Effects of Gene Mutations. University Chemistry, 2025, 40(3): 277-284. doi: 10.12461/PKU.DXHX202412104
-
[5]
Haitang WANG , Yanni LING , Xiaqing MA , Yuxin CHEN , Rui ZHANG , Keyi WANG , Ying ZHANG , Wenmin WANG . Construction, crystal structures, and biological activities of two LnⅢ3 complexes. Chinese Journal of Inorganic Chemistry, 2024, 40(8): 1474-1482. doi: 10.11862/CJIC.20240188
-
[6]
Yukai Jiang , Yihan Wang , Yunkai Zhang , Yunping Wei , Ying Ma , Na Du . Characterization and Phase Diagram of Surfactant Lyotropic Liquid Crystal. University Chemistry, 2024, 39(4): 114-118. doi: 10.3866/PKU.DXHX202309033
-
[7]
Jiayu Gu , Siqi Wang , Jun Ling . Kinetics of Living Copolymerization: A Brief Discussion. University Chemistry, 2025, 40(4): 100-107. doi: 10.12461/PKU.DXHX202406012
-
[8]
Jingjing QING , Fan HE , Zhihui LIU , Shuaipeng HOU , Ya LIU , Yifan JIANG , Mengting TAN , Lifang HE , Fuxing ZHANG , Xiaoming ZHU . Synthesis, structure, and anticancer activity of two complexes of dimethylglyoxime organotin. Chinese Journal of Inorganic Chemistry, 2024, 40(7): 1301-1308. doi: 10.11862/CJIC.20240003
-
[9]
Congying Lu , Fei Zhong , Zhenyu Yuan , Shuaibing Li , Jiayao Li , Jiewen Liu , Xianyang Hu , Liqun Sun , Rui Li , Meijuan Hu . Experimental Improvement of Surfactant Interface Chemistry: An Integrated Design for the Fusion of Experiment and Simulation. University Chemistry, 2024, 39(3): 283-293. doi: 10.3866/PKU.DXHX202308097
-
[10]
Ping Song , Nan Zhang , Jie Wang , Rui Yan , Zhiqiang Wang , Yingxue Jin . Experimental Teaching Design on Synthesis and Antitumor Activity Study of Cu-Pyropheophorbide-a Methyl Ester. University Chemistry, 2024, 39(6): 278-286. doi: 10.3866/PKU.DXHX202310087
-
[11]
Qiqi Li , Su Zhang , Yuting Jiang , Linna Zhu , Nannan Guo , Jing Zhang , Yutong Li , Tong Wei , Zhuangjun Fan . 前驱体机械压实制备高密度活性炭及其致密电容储能性能. Acta Physico-Chimica Sinica, 2025, 41(3): 2406009-. doi: 10.3866/PKU.WHXB202406009
-
[12]
Changqing MIAO , Fengjiao CHEN , Wenyu LI , Shujie WEI , Yuqing YAO , Keyi WANG , Ni WANG , Xiaoyan XIN , Ming FANG . Crystal structures, DNA action, and antibacterial activities of three tetranuclear lanthanide-based complexes. Chinese Journal of Inorganic Chemistry, 2024, 40(12): 2455-2465. doi: 10.11862/CJIC.20240192
-
[13]
Jing WU , Puzhen HUI , Huilin ZHENG , Pingchuan YUAN , Chunfei WANG , Hui WANG , Xiaoxia GU . Synthesis, crystal structures, and antitumor activities of transition metal complexes incorporating a naphthol-aldehyde Schiff base ligand. Chinese Journal of Inorganic Chemistry, 2024, 40(12): 2422-2428. doi: 10.11862/CJIC.20240278
-
[14]
Guanghui SUI , Yanyan CHENG . Application of rice husk-based activated carbon-loaded MgO composite for symmetric supercapacitors. Chinese Journal of Inorganic Chemistry, 2025, 41(3): 521-530. doi: 10.11862/CJIC.20240221
-
[15]
Xin MA , Ya SUN , Na SUN , Qian KANG , Jiajia ZHANG , Ruitao ZHU , Xiaoli GAO . A Tb2 complex based on polydentate Schiff base: Crystal structure, fluorescence properties, and biological activity. Chinese Journal of Inorganic Chemistry, 2024, 40(7): 1347-1356. doi: 10.11862/CJIC.20230357
-
[16]
Xinting XIONG , Zhiqiang XIONG , Panlei XIAO , Xuliang NIE , Xiuying SONG , Xiuguang YI . Synthesis, crystal structures, Hirshfeld surface analysis, and antifungal activity of two complexes Na(Ⅰ)/Cd(Ⅱ) assembled by 5-bromo-2-hydroxybenzoic acid ligands. Chinese Journal of Inorganic Chemistry, 2024, 40(9): 1661-1670. doi: 10.11862/CJIC.20240145
-
[17]
Jianjun LI , Mingjie REN , Lili ZHANG , Lingling ZENG , Huiling WANG , Xiangwu MENG . UV-assisted degradation of tetracycline hydrochloride by MnFe2O4@activated carbon activated persulfate. Chinese Journal of Inorganic Chemistry, 2024, 40(10): 1869-1880. doi: 10.11862/CJIC.20240187
-
[18]
Hong RAO , Yang HU , Yicong MA , Chunxin LÜ , Wei ZHONG , Lihua DU . Synthesis and in vitro anticancer activity of phenanthroline-functionalized nitrogen heterocyclic carbene homo- and heterobimetallic silver/gold complexes. Chinese Journal of Inorganic Chemistry, 2024, 40(12): 2429-2437. doi: 10.11862/CJIC.20240275
-
[19]
Pengcheng Yan , Peng Wang , Jing Huang , Zhao Mo , Li Xu , Yun Chen , Yu Zhang , Zhichong Qi , Hui Xu , Henan Li . Engineering Multiple Optimization Strategy on Bismuth Oxyhalide Photoactive Materials for Efficient Photoelectrochemical Applications. Acta Physico-Chimica Sinica, 2025, 41(2): 100014-. doi: 10.3866/PKU.WHXB202309047
-
[20]
Ru SONG , Biao WANG , Chunling LU , Bingbing NIU , Dongchao QIU . Electrochemical properties of stable and highly active PrBa0.5Sr0.5Fe1.6Ni0.4O5+δ cathode material. Chinese Journal of Inorganic Chemistry, 2025, 41(4): 639-649. doi: 10.11862/CJIC.20240397
-
[1]
Metrics
- PDF Downloads(0)
- Abstract views(390)
- HTML views(41)