Advances in engineering methylotrophic yeast for biosynthesis of valuable chemicals from methanol
- Corresponding author: Zhou Yongjin J., zhouyongjin@dicp.ac.cn
Citation:
Duan Xingpeng, Gao Jiaoqi, Zhou Yongjin J.. Advances in engineering methylotrophic yeast for biosynthesis of valuable chemicals from methanol[J]. Chinese Chemical Letters,
;2018, 29(5): 681-686.
doi:
10.1016/j.cclet.2017.11.015
Y. Xue, C. Kong, W. Shen, et al., J. Biotechnol. 242(2017) 64-72.
doi: 10.1016/j.jbiotec.2016.11.031
P. Li, H. Sun, Z. Chen, et al., Microb. Cell. Fact. 14(2015) 22.
doi: 10.1186/s12934-015-0206-8
J.P. Schwarzhans, T. Luttermann, M. Geier, J. Kalinowski, K. Friehs, Biotechnol. Adv. 35(2017) 681-710.
doi: 10.1016/j.biotechadv.2017.07.009
J.W. Moser, R. Prielhofer, S.M. Gerner, et al., Microb. Cell. Fact. 16(2017) 49.
doi: 10.1186/s12934-017-0661-5
J. Pfeifenschneider, T. Brautaset, V.F. Wendisch, Bioprod. Biofuels Bioref. 11(2017) 719-731.
doi: 10.1002/bbb.2017.11.issue-4
R. van Dijk, K.N. Faber, J.A. Kiel, M. Veenhuis, I. van der Klei, Enzyme. Microb. Technol. 26(2000) 793-800.
doi: 10.1016/S0141-0229(00)00173-3
F.W. Krainer, C. Dietzsch, T. Hajek, et al., Microb. Cell. Fact. 11(2012) 22.
doi: 10.1186/1475-2859-11-22
M. Cayetano-Cruz, A.I.P.D.L. Santos, Y. García-Huante, et al., Biochem. Eng. J. 112(2016) 161-169.
doi: 10.1016/j.bej.2016.04.014
H. Yurimoto, N. Kato, Y. Sakai, Chem. Rec. 5(2005) 367-375.
doi: 10.1002/(ISSN)1528-0691
Y.C. Tsai, M.C. Lapina, S. Bhushan, O. Mueller-Cajar, Nat. Commun. 6(2015) 8883.
doi: 10.1038/ncomms9883
I.J. van der Klei, W. Harder, M. Veenhuis, Yeast 7(1991) 195-209.
doi: 10.1002/(ISSN)1097-0061
Y.J. Zhou, N.A. Buijs, Z. Zhu, et al., J. Am. Chem. Soc. 138(2016) 15368-15377.
doi: 10.1021/jacs.6b07394
S.S. Mane, V. Ghormade, S.G. Tupe, M.V. Deshpande, Diversity of Natural Yeast Flora of Grapes and Its Significance in Wine Making, Springer, Singapore, 2017.
T. Nakagawa, T. Mizumura, H. Mukaiyama, et al., Yeast 19(2002) 1067-1073.
doi: 10.1002/(ISSN)1097-0061
T. Nakagawa, T. Ito, S. Fujimura, et al., Yeast 21(2004) 445-453.
doi: 10.1002/(ISSN)1097-0061
F.S. Hartner, A. Glieder, Microb. Cell. Fact. 5(2006) 39.
doi: 10.1186/1475-2859-5-39
X. Wang, Q. Wang, J. Wang, et al., J. Biol. Chem. 291(2016) 6245-6261.
doi: 10.1074/jbc.M115.692053
G. Potvin, A. Ahmad, Z. Zhang, J. Biochem Eng. 64(2012) 91-105.
doi: 10.1016/j.bej.2010.07.017
T. Vogl, A. Glieder, New Biotechnol. 30(2013) 385-404.
doi: 10.1016/j.nbt.2012.11.010
A. Matsushika, T. Goshima, T. Fujii, et al., Enzyme. Microb. Technol. 51(2012) 16-25.
doi: 10.1016/j.enzmictec.2012.03.008
Y. Sakai, A.P. Murdanoto, T. Konishi, A. Iwamatsu, N. Kato, J. Bacteriol. 179(1997) 4480-4485.
doi: 10.1128/jb.179.14.4480-4485.1997
B. Lee, H. Yurimoto, Y. Sakai, N. Kato, Microbiology 148(2002) 2697-2704.
doi: 10.1099/00221287-148-9-2697
P. Zhang, W. Zhang, X. Zhou, et al., Appl. Environ. Microbiol. 76(2010) 6108-6118.
doi: 10.1128/AEM.00607-10
Y. Sasano, H. Yurimoto, M. Kuriyama, Y. Sakai, Fems. Yeast Res. 10(2010) 535-544.
W.C. Raschke, B.R. Neiditch, M. Hendricks, J.M. Cregg, Gene 177(1996) 163.
doi: 10.1016/0378-1119(96)00293-4
G.P. Lin-Cereghino, L. Godfrey, B.J. de la Cruz, et al., Mol. Cell. Biol. 26(2006) 883-897.
doi: 10.1128/MCB.26.3.883-897.2006
B.V. Kranthi, R. Kumar, N.V. Kumar, D.N. Rao, P.N. Rangarajan, Biochim. Biophys. Acta 1789(2009) 460-468.
doi: 10.1016/j.bbagrm.2009.05.004
B.V. Kranthi, H.R. Kumar, P.N. Rangarajan, Yeast 27(2010) 705-711.
doi: 10.1002/yea.1766
U. Sahu, R.K. Krishna, P.N. Rangarajan, Biochem. Biophys. Res. Commun. 451(2014) 158-164.
doi: 10.1016/j.bbrc.2014.07.094
A.N. Leao-Helder, A.M. Krikken, I.J. van der Klei, J.A. Kiel, M. Veenhuis, J. Biol. Chem. 278(2003) 40749-40756.
doi: 10.1074/jbc.M304029200
Y. Xuan, X. Zhou, W. Zhang, et al., FEMS. Yeast Res. 9(2009) 1271-1282.
doi: 10.1111/fyr.2009.9.issue-8
Y. Sakai, T. Nakagawa, M. Shimase, N. Kato, J. Bacteriol. 180(1998) 5885-5890.
Z.A. Janowicz, M.R. Eckart, C. Drewke, et al., Nucleic Acids Res. 13(1985) 3043-3062.
doi: 10.1093/nar/13.9.3043
J.F. Tschopp, P.F. Brust, J.M. Cregg, C.A. Stillman, T.R. Gingeras, Nucleic Acids Res. 15(1987) 3859-3876.
doi: 10.1093/nar/15.9.3859
S. Shen, G. Sulter, T.W. Jeffries, J.M. Cregg, Gene 216(1998) 93-102.
doi: 10.1016/S0378-1119(98)00315-1
S. L. Goldberg, P. M. Cino, R. N. Patel, V. B. Nanduri, R. M. Johnston, US Patent 20040038237A1.
J.M. Clomburg, A.M. Crumbley, R. Gonzalez, Science 355(2017).
J.C. Liao, L. Mi, S. Pontrelli, S. Luo, Nat. Rev. Microbiol. 14(2016) 288-304.
doi: 10.1038/nrmicro.2016.32
T. Vogl, L. Sturmberger, T. Kickenweiz, et al., ACS Synth. Biol. 5(2016) 172-186.
doi: 10.1021/acssynbio.5b00199
C.E. Vickers, T.C. Williams, B. Peng, J. Cherry, Curr. Opin. Chem. Biol. 40(2017) 47-56.
doi: 10.1016/j.cbpa.2017.05.017
C.J. Paddon, P.J. Westfall, D.J. Pitera, et al., Nature 496(2013) 528-532.
doi: 10.1038/nature12051
A. Bhataya, C. Schmidt-Dannert, P.C. Lee, Biochem. 44(2009) 1095-1102.
H. Harada, F. Yu, S. Okamoto, et al., Appl. Microbiol. Biot. 81(2009) 915-925.
doi: 10.1007/s00253-008-1724-7
T. Wriessnegger, P. Augustin, M. Engleder, et al., Metab. Eng. 24(2014) 18-29.
doi: 10.1016/j.ymben.2014.04.001
X.B. Liu, M. Liu, X.Y. Tao, et al., J. Biotechnol. 216(2015) 47-55.
doi: 10.1016/j.jbiotec.2015.10.005
M. Lamacka, J. Sajbidor, Biotechnol. Tech. 11(1997) 723-725.
doi: 10.1023/A:1018484015806
A.L. Meadows, K.M. Hawkins, Y. Tsegaye, et al., Nature 537(2016) 694-697.
doi: 10.1038/nature19769
T. Yu, Y.J. Zhou, L. Wenning, et al., Nat. Commun. 8(2017) 15587.
doi: 10.1038/ncomms15587
K. Qiao, T.M. Wasylenko, K. Zhou, P. Xu, G. Stephanopoulos, Nat. Biotechnol. 35(2017) 173.
doi: 10.1038/nbt.3763
Y.J. Zhou, N.A. Buijs, Z. Zhu, et al., Nat. Commun. 7(2016) 11709.
doi: 10.1038/ncomms11709
J. Jaworski, E.B. Cahoon, Curr. Opin. Plant. Bio. 6(2003) 178-184.
doi: 10.1016/S1369-5266(03)00013-X
D. Meesapyodsuk, Y. Chen, S.H. Ng, J. Chen, X. Qiu, J. Lipid. Res. 56(2015) 2102.
doi: 10.1194/jlr.M060954
S.H. Kim, K.H. Roh, K.S. Kim, et al., Biotechnol. Lett. 36(2014) 1843-1851.
doi: 10.1007/s10529-014-1550-1
K. Laoteng, R. Ruenwai, M. Tanticharoen, S. Cheevadhanarak, FEMS. Microbiol. Lett. 245(2005) 169-178.
doi: 10.1016/j.femsle.2005.03.006
B. Khongto, K. Laoteng, A. Tongta, J. Microbiol. Biotechnol. 20(2010) 1555-1562.
doi: 10.4014/jmb
F.T. Wong, C. Khosla, Curr. Opin. Chem. Biol. 16(2012) 117.
doi: 10.1016/j.cbpa.2012.01.018
L. Gao, M. Cai, W. Shen, et al., Microb. Cell. Fact. 12(2013) 77.
doi: 10.1186/1475-2859-12-77
Y. Xue, C. Kong, W. Shen, et al., J. Biotechnol. 242(2016).
Y. He, R.J. Cox, Chem. Sci. 7(2016) 2119-2127.
doi: 10.1039/C5SC04027B
M. Geier, P. Fauland, T. Vogl, A. Glieder, Chem. Commun. 51(2015) 1643-1646.
doi: 10.1039/C4CC08502G
L. Naatsaari, B. Mistlberger, C. Ruth, et al., PLoS One 7(2012) e39720.
doi: 10.1371/journal.pone.0039720
N.D. Carvalho, M. Arentshorst, M. Jin Kwon, V. Meyer, A.F. Ram, Appl. Microbiol. Biotechnol. 87(2010) 1463-1473.
doi: 10.1007/s00253-010-2588-1
A. Weninger, A.M. Hatzl, C. Schmid, T. Vogl, A. Glieder, J. Biotechnol. 235(2016) 139-149.
doi: 10.1016/j.jbiotec.2016.03.027
R. Kelwick, J.T. MacDonald, A.J. Webb, P. Freemont, Front. Bioeng. Biotechnol. 2(2014) 60.
J.E. Dicarlo, J.E. Norville, P. Mali, et al., Nucleic Acids Res. 41(2013) 4336-4343.
doi: 10.1093/nar/gkt135
I. Liachko, M.J. Dunham, FEMS Yeast Res. 14(2013) 364.
I. Liachko, R.A. Youngblood, K. Tsui, et al., Plos Genet. 10(2014) e1004169.
doi: 10.1371/journal.pgen.1004169
W. Qian, H. Song, Y. Liu, et al., J. Microbiol. Methods 79(2009) 253-259.
doi: 10.1016/j.mimet.2009.09.004
C. Gonzalez, G. Perdomo, P. Tejera, N. Brito, J.M. Siverio, Yeast 15(1999) 1323-1329.
doi: 10.1002/(ISSN)1097-0061
W.B. Whitaker, N.R. Sandoval, R.K. Bennett, A.G. Fast, E.T. Papoutsakis, Curr. Opin. Biotechnol. 33(2015) 165-175.
doi: 10.1016/j.copbio.2015.01.007
Z. Gong, J. Nielsen, Y.J. Zhou, J. Biotechnol. 12(2017) 201700014.
Fenglin Jiang , Anan Liu , Qian Wei , Youcai Hu . Editing function of type Ⅱ thioesterases in the biosynthesis of fungal polyketides. Chinese Chemical Letters, 2024, 35(10): 109504-. doi: 10.1016/j.cclet.2024.109504
Chuan Li , Yangyang Han , Yanan Zhai , Ke Li , Xingzhong Liu , Zhuan Zhang , Cai Jia , Yongsheng Che . Phomaketals A and B, pentacyclic meroterpenoids from a eupC overexpressed mutant strain of Phoma sp.. Chinese Chemical Letters, 2024, 35(7): 109019-. doi: 10.1016/j.cclet.2023.109019
Aimin Fu , Chunmei Chen , Qin Li , Nanjin Ding , Jiaxin Dong , Yu Chen , Mengsha Wei , Weiguang Sun , Hucheng Zhu , Yonghui Zhang . Niduenes A−F, six functionalized sesterterpenoids with a pentacyclic 5/5/5/5/6 skeleton from endophytic fungus Aspergillus nidulans. Chinese Chemical Letters, 2024, 35(9): 109100-. doi: 10.1016/j.cclet.2023.109100
Kunya Wang , Bingyu Liu , Daojiang Yan , Jian Bai , Haibo Yu , Youcai Hu . Full biosynthetic pathway of pyrrolobenzoxazines. Chinese Chemical Letters, 2025, 36(1): 109811-. doi: 10.1016/j.cclet.2024.109811
Jinqiang Gao , Haifeng Yuan , Xinjuan Du , Feng Dong , Yu Zhou , Shengnan Na , Yanpeng Chen , Mingyu Hu , Mei Hong , Shihe Yang . Methanol steam mediated corrosion engineering towards high-entropy NiFe layered double hydroxide for ultra-stable oxygen evolution. Chinese Chemical Letters, 2025, 36(1): 110232-. doi: 10.1016/j.cclet.2024.110232
Jing Guo , Zhi-Guo Lu , Rui-Chen Zhao , Bao-Ku Li , Xin Zhang . Nucleic acid therapy for metabolic-related diseases. Chinese Chemical Letters, 2025, 36(3): 109875-. doi: 10.1016/j.cclet.2024.109875
Fukui Shen , Yuqing Zhang , Guoqing Luan , Kaixue Zhang , Zhenzhen Wang , Yunhao Luo , Yuanyuan Hou , Gang Bai . Revealing drug targets with multimodal bioorthogonal AMPD probes through visual metabolic labeling. Chinese Chemical Letters, 2024, 35(12): 109646-. doi: 10.1016/j.cclet.2024.109646
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Chunru Liu , Ligang Feng . Advances in anode catalysts of methanol-assisted water-splitting reactions for hydrogen generation. Chinese Journal of Structural Chemistry, 2023, 42(10): 100136-100136. doi: 10.1016/j.cjsc.2023.100136
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Yanhua Peng , Xin Yu , Ting Wang . Adaptive nanoconfined Fenton-like reactions: Tailoring carbon pathways for sustainable water treatment and energy harvesting. Chinese Chemical Letters, 2024, 35(12): 110198-. doi: 10.1016/j.cclet.2024.110198
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