引用本文:
Chao CHEN, Yuan Xin TIAN, Xiao Yong ZOU, Pei Xiang CAI, Jin Yuan MO. A Cooperative Approach for the Extraction of Protein Motifs[J]. Chinese Chemical Letters,
2006, 17(5): 707-710.
Citation: Chao CHEN, Yuan Xin TIAN, Xiao Yong ZOU, Pei Xiang CAI, Jin Yuan MO. A Cooperative Approach for the Extraction of Protein Motifs[J]. Chinese Chemical Letters, 2006, 17(5): 707-710.
Citation: Chao CHEN, Yuan Xin TIAN, Xiao Yong ZOU, Pei Xiang CAI, Jin Yuan MO. A Cooperative Approach for the Extraction of Protein Motifs[J]. Chinese Chemical Letters, 2006, 17(5): 707-710.
A Cooperative Approach for the Extraction of Protein Motifs
摘要:
By integrating the concept of cooperative approach, an extension of the fast annealing coevolutionary algorithm is presented in this paper. It outperformed the original algorithm in the domain of function optimization, especially in terms of convergence rate. It was also applied to a real optimization problem, protein motif extraction. And a satisfactory result has been obtained with the accuracy of prediction achieving 67.0%, which is in agreement with the result in the PROSITE database.
English
A Cooperative Approach for the Extraction of Protein Motifs
Abstract:
By integrating the concept of cooperative approach, an extension of the fast annealing coevolutionary algorithm is presented in this paper. It outperformed the original algorithm in the domain of function optimization, especially in terms of convergence rate. It was also applied to a real optimization problem, protein motif extraction. And a satisfactory result has been obtained with the accuracy of prediction achieving 67.0%, which is in agreement with the result in the PROSITE database.
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Key words:
- Cooperative approach
- / global optimization
- / protein motifs extraction
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