Citation: XU Xian-Jin, SU Ji-Guo, LIU Bin, LI Chun-Hua, TAN Jian-Jun, ZHANG Xiao-Yi, CHEN Wei-Zu, WANG Cun-Xin. Reverse Virtual Screening on Persistent Organic Pollutants 4,4’-DDE and CB-153[J]. Acta Physico-Chimica Sinica, ;2013, 29(10): 2276-2285. doi: 10.3866/PKU.WHXB201307161 shu

Reverse Virtual Screening on Persistent Organic Pollutants 4,4’-DDE and CB-153

  • Received Date: 10 April 2013
    Available Online: 16 July 2013

    Fund Project: 国际科技合作项目(2010DFA31710) (2010DFA31710)国家自然科学基金(31100523, 31171267, 21173014, 11204267) (31100523, 31171267, 21173014, 11204267)

  • Persistent organic pollutants (POPs) cause various diseases in both human and wildlife and have become a new global environmental problem. The toxic effects of POPs can be induced through their binding to specific proteins in the body. In the present work, a reverse virtual screening method based on molecular docking was used to search for potential protein targets for two POPs, 4,4'-dichlorodiphenyldichloroethane (4, 4'-DDD) and 2,2',4,4',5,5'-hexachlorobiphenyl (CB-153), froma protein structure database. Targets ranked in the top 5%were chosen for analysis using experimental information. All known targets appeared in the top 5% of targets. This study not only increases understanding of the toxic mechanismof POPs, but may also aid the design of novel recognition elements in biosensors.

  • 加载中
    1. [1]

      (1) Jones, K. C.; de Voogt, P. Environ. Pollut. 1999, 100, 209. doi: 10.1016/S0269-7491(99)00098-6

    2. [2]

      (2) Yu, G.; Niu, J. F.; Huang, J. Persistent Organic Pollutants——a New lbal Environmental Problem; Science Press: Beijing,2005; pp 1-164. [余刚, 牛军峰, 黄俊.持久性有机污染物——新的全球性环境问题. 北京: 科学出版社, 2005: 1-164.]

    3. [3]

      (3) Lohmann, R.; Breivik, K.; Dachs, J.; Muir, D. Environ. Pollut.2007, 150, 150. doi: 10.1016/j.envpol.2007.06.051

    4. [4]

      (4) Mandal, P. K. J. Comp. Physiol. B 2005, 175, 221. doi: 10.1007/s00360-005-0483-3

    5. [5]

      (5) Xu, X. J.; Cannistraro, S.; Bizzarri, A. R.; Zeng, Y.; Chen, W.Z.; Wang, C. H. Chem. Res. Chin. Univ. 2013, 29, 299. doi: 10.1007/s40242-013-2384-4

    6. [6]

      (6) Lintelmann, J.; Katayama, A.; Kurihara, N.; Shore, L.; Wenzel,A. Pure Appl. Chem. 2003, 75, 631. doi: 10.1351/pac200375050631

    7. [7]

      (7) Vandenberg, L. N.; Colborn, T.; Hayes, T. B.; Heindel, J. J.;Jacobs, D. R.; Lee, D. H.; Shioda, T.; Soto, A. M.; vomSaal, F.S.; Welshons, W. V.; Zoeller, R. T.; Myers, J. P. Endocr. Rev.2012, 33, 378. doi: 10.1210/er.2011-1050

    8. [8]

      (8) Luccio-Camelo, D. C.; Prins, G. S. J. Steroid Biochem. 2011,127, 74. doi: 10.1016/j.jsbmb.2011.04.004

    9. [9]

      (9) Chambers, J. P.; Arulanandam, B. P.; Matta, L. L.; Weis, A.;Valdes, J. J. Curr. Issues Mol. Biol. 2008, 10, 1.

    10. [10]

      (10) Rodriguez-Mozaz, S.; de Alda, M. J. L.; Barcelo, D. Anal. Bioanal. Chem. 2006, 386, 1025. doi: 10.1007/s00216-006-0574-3

    11. [11]

      (11) Rodriguez-Mozaz, S.; Marco, M. P.; Lopez de Alda, M. J.;Barcelo, D. Anal. Bioanal. Chem. 2004, 378, 588. doi: 10.1007/s00216-003-2385-0

    12. [12]

      (12) Rognan, D. Mol. Inform. 2010, 29, 176. doi: 10.1002/minf.v29:3

    13. [13]

      (13) Li, H.; Gao, Z.; Kang, L.; Zhang, H.; Yang, K.; Yu, K.; Luo, X.;Zhu, W.; Chen, K.; Shen, J.; Wang, X.; Jiang, H. Nucleic Acids Res. 2006, 34,W219.

    14. [14]

      (14) Li, X. D.; Xu, X. J.; Hu, J. Acta Phys. -Chim. Sin. 2008, 24, 307.[李旭东,徐筱杰,胡娟.物理化学学报, 2008, 24, 307.]doi: 10.3866/PKU.WHXB20080221

    15. [15]

      (15) Yang, L.; Luo, H.; Chen, J.; Xing, Q.; He, L. Nucleic Acids Res.2009, 37,W406.

    16. [16]

      (16) Zhang, X. Y.; Liu, B.; He, H. Q.; Yang, D.; Wang, C. X. Acta Phys. -Chim. Sin., 2009, 25, 817. [张小轶,刘斌,何红秋,杨东,王存新. 物理化学学报, 2009, 25, 817.] doi: 10.3866/PKU.WHXB20090505

    17. [17]

      (17) Kinnings, S. L.; Jackson, R. M. J. Chem. Inf. Model. 2011, 51,624. doi: 10.1021/ci1003174

    18. [18]

      (18) Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; et al . Gaussian 03,Revision B.05; Gaussian Inc.: Wallingford, CT, 2004.

    19. [19]

      (19) Kellenberger, E.; Muller, P.; Schalon, C.; Bret, G.; Foata, N.;Rognan, D. J. Chem. Inf. Model. 2006, 46, 717. doi: 10.1021/ci050372x

    20. [20]

      (20) Meslamani, J.; Rognan, D.; Kellenberger, E. Bioinformatics2011, 27, 1324. doi: 10.1093/bioinformatics/btr120

    21. [21]

      (21) Gao, Z.; Li, H.; Zhang, H.; Liu, X.; Kang, L.; Luo, X.; Zhu, W.;Chen, K.; Wang, X.; Jiang, H. BMC Bioinformatics 2008, 9,104. doi: 10.1186/1471-2105-9-104

    22. [22]

      (22) Morris, G. M.; Huey, R.; Lindstrom, W.; Sanner, M. F.; Belew,R. K.; odsell, D. S.; Olson, A. J. J. Comput. Chem. 2009, 30,2785. doi: 10.1002/jcc.v30:16

    23. [23]

      (23) Gasteiger, J.; Marsili, M. Tetrahedron 1980, 36, 3219. doi: 10.1016/0040-4020(80)80168-2

    24. [24]

      (24) Huey, R.; Morris, G. M.; Olson, A. J.; odsell, D. S.J. Comput. Chem. 2007, 28, 1145.

    25. [25]

      (25) Hauser, R.; Singh, N. P.; Chen, Z.; Pothier, L.; Altshul, L. Hum. Reprod. 2003, 18, 2525. doi: 10.1093/humrep/deg508

    26. [26]

      (26) Richthoff, J.; Rylander, L.; Jonsson, B. A.; Akesson, H.;Hagmar, L.; Nilsson-Ehle, P.; Stridsberg, M.; Giwercman, A.Environ. Health Perspect. 2003, 111, 409. doi: 10.1289/ehp.111-a409

    27. [27]

      (27) Rignell-Hydbom, A.; Rylander, L.; Giwercman, A.; Jonsson, B.A. G.; Nilsson-Ehle, P.; Hagmar, L. Hum. Reprod. 2004, 19,2066. doi: 10.1093/humrep/deh362

    28. [28]

      (28) Gao, W.; Bohl, C. E.; Dalton, J. T. Chem. Rev. 2005, 105,3352. doi: 10.1021/cr020456u

    29. [29]

      (29) Hauser, R.; Chen, Z. Y.; Pothier, L.; Ryan, L.; Altshul, L.Environ. Health Persp. 2003, 111, 1505. doi: 10.1289/ehp.6175

    30. [30]

      (30) Spano, M.; Toft, G.; Hagmar, L.; Eleuteri, P.; Rescia, M.;Rignell-Hydbom, A.; Tyrkiel, E.; Zvyezday, V.; Bonde, J. P.Inuendo. Hum. Reprod. 2005, 20, 3488. doi: 10.1093/humrep/dei297

    31. [31]

      (31) Bjork, C.; Nenonen, H.; Giwercman, A.; Bergman, A.; Rylander,L.; Giwercman, Y. L. Reprod. Toxicol. 2011, 32, 293. doi: 10.1016/j.reprotox.2011.06.075

    32. [32]

      (32) Hardell, L.; van Bavel, B.; Lindstrom, G.; Carlberg, M.;Dreifaldt, A. C.;Wijkstrom, H.; Starkhammar, H.; Eriksson, M.;Hallquist, A.; Kolmert, T. Environ. Health Persp. 2003, 111, 930.

    33. [33]

      (33) Tiido, T.; Rignell-Hydbom, A.; Jonsson, B. A. G.; Giwercman,Y. L.; Pedersen, H. S.; Wojtyniak, B.; Ludwicki, J. K.; Lesovoy,V.; Zvyezday, V.; Spano, M.; Manicardi, G. C.; Bizzaro, D.;Bonefeld-Jorgensen, E. C.; Toft, G.; Bonde, J. P.; Rylander, L.;Hagmar, L.; Giwercman, A.; Grp, I. Environ. Health Persp.2006, 114, 718.

    34. [34]

      (34) Wallace, A. C.; Laskowski, R. A.; Thornton, J. M. Protein Eng.1995, 8, 127. doi: 10.1093/protein/8.2.127

    35. [35]

      (35) Li, E.; Norris, A. W. Annu. Rev. Nutr. 1996, 16, 205. doi: 10.1146/annurev.nu.16.070196.001225

    36. [36]

      (36) Weinshilboum, R. M.; Otterness, D. M.; Szumlanski, C. L.Annu. Rev. Pharmacol. Toxicol. 1999, 39, 19. doi: 10.1146/annurev.pharmtox.39.1.19

    37. [37]

      (37) Binda, C.; Newton-Vinson, P.; Hubalek, F.; Edmondson, D. E.;Mattevi, A. Nat. Struct. Biol. 2002, 9, 22. doi: 10.1038/nsb732

    38. [38]

      (38) Kitamura, S.; Shimizu, Y.; Shiraga, Y.; Yoshida, M.; Sugihara,K.; Ohta, S. Drug Metab. Dispos. 2002, 30, 113. doi: 10.1124/dmd.30.2.113

    39. [39]

      (39) Karmaus, W.; Kuehr, J.; Kruse, H. Arch. Environ. Health 2001,56, 485. doi: 10.1080/00039890109602896

    40. [40]

      (40) Karmaus, W.; Davis, S.; Chen, Q.; Kuehr, J.; Kruse, H. Paediatr. Perinat. Epidemiol. 2003, 17, 212. doi: 10.1046/j.1365-3016.2003.00488.x


  • 加载中
    1. [1]

      Yang MeiqingLu WangHaozi LuYaocheng YangSong Liu . Recent Advances of Functional Nanomaterials for Screen-Printed Photoelectrochemical Biosensors. Acta Physico-Chimica Sinica, 2025, 41(2): 100018-0. doi: 10.3866/PKU.WHXB202310046

    2. [2]

      Xinyi Hong Tailing Xue Zhou Xu Enrong Xie Mingkai Wu Qingqing Wang Lina Wu . Non-Site-Specific Fluorescent Labeling of Proteins as a Chemical Biology Experiment. University Chemistry, 2024, 39(4): 351-360. doi: 10.3866/PKU.DXHX202310010

    3. [3]

      Lin′an CAODengyue MAGang XU . Research advances in electrically conductive metal-organic frameworks-based electrochemical sensors. Chinese Journal of Inorganic Chemistry, 2025, 41(10): 1953-1972. doi: 10.11862/CJIC.20250160

    4. [4]

      Zhi Zheng Feiyang Liu Junlong Zhao . D-Amino Acids and Mirror-Image Proteins. University Chemistry, 2026, 41(2): 353-359. doi: 10.12461/PKU.DXHX202505017

    5. [5]

      Xingchao ZhaoXiaoming LiMing LiuZijin ZhaoKaixuan YangPengtian LiuHaolan ZhangJintai LiXiaoling MaQi YaoYanming SunFujun Zhang . Photomultiplication-Type All-Polymer Photodetectors and Their Applications in Photoplethysmography Sensor. Acta Physico-Chimica Sinica, 2025, 41(1): 100007-0. doi: 10.3866/PKU.WHXB202311021

    6. [6]

      Huihui LIUBaichuan ZHAOTingting ZHANGChuanhui WANGZhi WANGCongyun ZHANG . High-sensitivity surface-enhanced Raman scattering detection and self-cleaning performance of organic pollutants based on a filter membrane sandwich structure. Chinese Journal of Inorganic Chemistry, 2026, 42(6): 1299-1311. doi: 10.11862/CJIC.20260362

    7. [7]

      Qiaoqiao BAIAnqi ZHOUXiaowei LITang LIUSong LIU . Construction of pressure-temperature dual-functional flexible sensors and applications in biomedicine. Chinese Journal of Inorganic Chemistry, 2024, 40(12): 2259-2274. doi: 10.11862/CJIC.20240128

    8. [8]

      Xinran Zhang Siqi Liu Yichi Chen Qingli Zou Qinghong Xu Yaqin Huang . From Protein to Energy Storage Materials: Edible Gelatin Jelly Electrolyte. University Chemistry, 2025, 40(7): 255-266. doi: 10.12461/PKU.DXHX202408104

    9. [9]

      Xinxin YUYongxing LIUXiaohong YIMiao CHANGFei WANGPeng WANGChongchen WANG . Photocatalytic peroxydisulfate activation for degrading organic pollutants over the zero-valent iron recovered from subway tunnels. Chinese Journal of Inorganic Chemistry, 2025, 41(5): 864-876. doi: 10.11862/CJIC.20240438

    10. [10]

      Ke ZhaoZhen LiuLuyao LiuChangyuan YuJingshun PanXuguang Huang . Functionalized Reflective Structure Fiber-Optic Interferometric Sensor for Trace Detection of Lead Ions. Acta Physico-Chimica Sinica, 2024, 40(4): 2304029-0. doi: 10.3866/PKU.WHXB202304029

    11. [11]

      Yuanqing WangYusong PanHongwu ZhuYanlei XiangRong HanRun HuangChao DuChengling Pan . Enhanced Catalytic Activity of Bi2WO6 for Organic Pollutants Degradation under the Synergism between Advanced Oxidative Processes and Visible Light Irradiation. Acta Physico-Chimica Sinica, 2024, 40(4): 2304050-0. doi: 10.3866/PKU.WHXB202304050

    12. [12]

      Anqi LIWenjing YANGXueming LIYanfong REN . Performance and mechanism of a foam Ti/FeCo-Fe2O3-CoFe2O4/SnO2-Sb anode for synergistic activation of peroxymonosulfate toward degradation of organic pollutants. Chinese Journal of Inorganic Chemistry, 2026, 42(5): 944-958. doi: 10.11862/CJIC.20250323

    13. [13]

      Jun LUOBaoshu LIUYunchang ZHANGBingkai WANGBeibei GUOLan SHETianheng CHEN . Europium(Ⅲ) metal-organic framework as a fluorescent probe for selectively and sensitively sensing Pb2+ in aqueous solution. Chinese Journal of Inorganic Chemistry, 2024, 40(12): 2438-2444. doi: 10.11862/CJIC.20240240

    14. [14]

      Wei Zheng Yanyu Chen Rizhong Gao Chao Lu . Development and Application of Primary Battery-based Humidity Sensors: Advancing a New Paradigm for Integrated Experimental Teaching through Science-Education Synergy. University Chemistry, 2026, 41(4): 393-399. doi: 10.12461/PKU.DXHX202503009

    15. [15]

      Haihuan YUJing SUNZhongmin SU . Research progress of water-stable metal-organic frameworks fluorescent sensors in food safety detection. Chinese Journal of Inorganic Chemistry, 2026, 42(8): 1569-1581. doi: 10.11862/CJIC.20260062

    16. [16]

      Jiarong Feng Yejie Duan Chu Chu Dezhen Xie Qiu'e Cao Peng Liu . Preparation and Application of a Streptomycin Molecularly Imprinted Electrochemical Sensor: A Suggested Comprehensive Analytical Chemical Experiment. University Chemistry, 2024, 39(8): 295-305. doi: 10.3866/PKU.DXHX202401016

    17. [17]

      Junlin Ma Enze Wang Haixia Wu . 柔性电化学传感器的制备及其在重金属离子现场便携检测中的应用. University Chemistry, 2026, 41(5): 455-468. doi: 10.12461/PKU.DXHX202509102

    18. [18]

      Jianfang QINYuying ZHANGLijuan JIAJiaqi LIANGYuxing YANGHaiying YANGXu LIU . Accurate determination of profenofos by Au25-xAgx(PET)18 (PET=2-phenylethanethiol) nanocluster-based electrochemical sensors. Chinese Journal of Inorganic Chemistry, 2026, 42(6): 1164-1174. doi: 10.11862/CJIC.20250378

    19. [19]

      Zhibei Qu Changxin Wang Lei Li Jiaze Li Jun Zhang . Organoid-on-a-Chip for Drug Screening and the Inherent Biochemistry Principles. University Chemistry, 2024, 39(7): 278-286. doi: 10.3866/PKU.DXHX202311039

    20. [20]

      Ping LIGeng TANXin HUANGFuxing SUNJiangtao JIAGuangshan ZHUJia LIUJiyang LI . Green synthesis of metal-organic frameworks with open metal sites for efficient ammonia capture. Chinese Journal of Inorganic Chemistry, 2025, 41(10): 2063-2068. doi: 10.11862/CJIC.20250020

Metrics
  • PDF Downloads(717)
  • Abstract views(1422)
  • HTML views(86)

通讯作者: 陈斌, bchen63@163.com
  • 1. 

    沈阳化工大学材料科学与工程学院 沈阳 110142

  1. 本站搜索
  2. 百度学术搜索
  3. 万方数据库搜索
  4. CNKI搜索
Address:Zhongguancun North First Street 2,100190 Beijing, PR China Tel: +86-010-82449177-888
Powered By info@rhhz.net

/

DownLoad:  Full-Size Img  PowerPoint
Return