Hydrogen Bond Cooperative Effect in Single Cage Water Clusters
- Corresponding author: Zuo-Yin YANG, yangzy@mail.buct.edu.cn
Citation:
Xiao-Min HU, Yu-Tian YU, Si-Yu CHEN, Ming LEI, Min PU, Zuo-Yin YANG. Hydrogen Bond Cooperative Effect in Single Cage Water Clusters[J]. Chinese Journal of Structural Chemistry,
;2020, 39(7): 1213-1225.
doi:
10.14102/j.cnki.0254–5861.2011–2563
Desiraju, G. R.; Steiner, T. The Weak Hydrogen Bond in Structural Chemistry and Biology. Oxford University Press, Oxford 1999.
Steiner, T. Hydrogen bonds from water molecules to aromatic acceptors in very high-resolution protein crystal structures. Biophy. Chem 2002, 95, 195−201.
doi: 10.1016/S0301-4622(01)00256-3
Xantheas, S. S. Cooperativity and hydrogen bonding network in water clusters. Chem. Phys. 2000, 258, 225−231.
doi: 10.1016/S0301-0104(00)00189-0
Znamenskiy, V. S.; Green, M. E. Quantum calculations on hydrogen bonds in certain water clusters show cooperative effects. J. Chem. Theo. Comput. 2007, 3, 103−114.
doi: 10.1021/ct600139d
Yoo, S.; Aprà, E.; Zeng, X. C.; Xantheas, S. S. High-level ab initio electronic structure calculations of water clusters (H2O)16 and (H2O)17: a new global minimum for (H2O)16. J. Phys. Chem. Lett. 2014, 1, 3122−3127.
Shields, R. M.; Temelso, B.; Archer, K. A.; Morrell, T. E.; Shields, G. C. Accurate predictions of water cluster formation, (H2O)n (n = 2~10). J. Phys. Chem. A 2010, 114, 11725−11737.
Satya, B.; Soohaeng, Y.; Aprà, E.; Xantheas, S. S.; Zeng, X. C. Lowest-energy structures of water clusters (H2O)11 and (H2O)13. J. Phys. Chem. A 2006, 110, 11781−11784.
doi: 10.1021/jp0655726
Temelso, B.; Archer, K. A.; Shields, G. C. Benchmark structures and binding energies of small water clusters with anharmonicity corrections. J. Phys. Chem. A 2011, 115, 12034−12046.
doi: 10.1021/jp2069489
Hodges, M. P.; Stone, A. J.; Xantheas, S. S. Contribution of many-body terms to the energy for small water clusters: a comparison of ab initio calculations and accurate model potentials. J. Phys. Chem. A 1997, 101, 9163−9168.
doi: 10.1021/jp9716851
Akase, D.; Aida, M. Distribution of topologically distinct isomers of water clusters and dipole moments of constituent water molecules at finite atmospheric temperatures. J. Phys. Chem. A 2014, 118, 7911−7924.
doi: 10.1021/jp504854f
Sloan, D. E. Fundamental principles and applications of natural gas hydrates. Nature 2003, 426, 353−363.
doi: 10.1038/nature02135
Kuo, J. L.; Coe, J. V.; Singer, S. J.; Band, Y. B.; Ojamäe, L. On the use of graph invariants for efficiently generating hydrogen bond topologies and predicting physical properties of water clusters and ice. J. Chem. Phys. 2001, 114, 2527−2540.
doi: 10.1063/1.1336804
Anick, D. J. Polyhedral water clusters, Ⅰ: formal consequences of the ice rules. J. Mol. Struc-Theochem. 2002, 587, 87−96.
doi: 10.1016/S0166-1280(02)00101-X
Anick, D. J. Polyhedral water clusters, Ⅱ: correlations of connectivity parameters with electronic energy and hydrogen bond lengths. J. Mol. Struc-Theochem. 2002, 587, 97−110.
doi: 10.1016/S0166-1280(02)00100-8
Kirov, M. V.; Fanourgakis, G. S.; Xantheas, S. S. Identifying the most stable networks in polyhedral water clusters. Chem. Phys. Lett. 2008, 461, 180−188.
doi: 10.1016/j.cplett.2008.04.079
Kuo, J. L.; Ciobanu, C. V.; Ojamäe, L.; Shavitt, I.; Singer, S. J. Short H-bonds and spontaneous self-dissociation in (H2O)20: effects of h-bond topology. J. Chem. Phys. 2003, 118, 3583−3588.
doi: 10.1063/1.1538240
Anick, D. J. Application of database methods to the prediction of B3LYP-optimized polyhedral water cluster geometries and electronic energies. J. Chem. Phys. 2003, 119, 12442−12456.
doi: 10.1063/1.1625631
Anick, D. J. O–H stretch modes of dodecahedral water clusters: a statistical ab initio study. J. Phys. Chem. A 2006, 110, 5135−5143.
doi: 10.1021/jp055632s
Iwata, S. Dispersion energy evaluated by using locally projected occupied and excited molecular orbitals for molecular interaction. J. Chem. Phys. 2011, 135, 094101−12.
doi: 10.1063/1.3629777
Iwata, S.; Bandyopadhyay, P.; Xantheas, S. S. Cooperative roles of charge transfer and dispersionterms in hydrogen-bonded networks of (H2O)n, n = 6, 11, and 16. J. Phys. Chem. A 2013, 117, 6641−6651.
doi: 10.1021/jp403837z
Iwata, S. Analysis of hydrogen bond energies and hydrogen bonded networks in water clusters (H2O)20 and (H2O)25 using the charge-transfer and dispersion terms. Phys. Chem. Chem. Phys. 2014, 16, 11310−11317.
doi: 10.1039/C4CP01204F
Iwata, S.; Akase, D.; Aida, M.; Xantheas, S. S. Electronic origin of dependence of hydrogen bond strengths on next-nearest-neighbor hydrogen bonds in polyhedral water clusters (H2O)n; n = 8, 20 and 24. Phys. Chem. Chem. Phys. 2016, 18, 19746−19756.
doi: 10.1039/C6CP02487D
Grimme, S. Semiempirical GGA-type density functional constructed with a long-range dispersion correction. Comput. Chem. 2006, 27, 1787−1799.
doi: 10.1002/jcc.20495
Frisch, M. J.; Trucks, G. W.; Schlegel, H. B.; Scuseria, G. E.; Robb, M. A.; Cheeseman, J. R.; Scalmani, G.; Barone, V.; Mennucci, B.; Petersson, G. A.; Nakatsuji, H.; Caricato, M.; Li, X.; Hratchian, H. P.; Izmaylov, A. F.; Bloino, J.; Zheng, G.; Sonnenberg, J. L.; Hada, M.; Ehara, M.; Toyota, K.; Fukuda, R.; Hasegawa, J.; Ishida, M.; Nakajima, T.; Honda, Y.; Kitao, O.; Nakai, H.; Vreven, T.; Montgomery, J. A. Jr.; Peralta, J. E.; Ogliaro, F.; Bearpark, M.; Heyd, J. J.; Brothers, E.; Kudin, K. N.; Staroverov, V. N.; Keith, T.; Kobayashi, R.; Normand, J.; Raghavachari, K.; Rendell, A.; Burant, J. C.; Iyengar, S. S.; Tomasi, J.; Cossi, M.; Rega, N.; Millam, J. M.; Klene, M.; Knox, J. E.; Cross, J. B.; Bakken, V.; Adamo, C.; Jaramillo, J.; Gomperts, R.; Stratmann, R. E.; Yazyev, O.; Austin, A. J.; Cammi, R.; Pomelli, C.; Ochterski, J. W.; Martin, R. L.; Morokuma, K.; Zakrzewski, V. G.; Voth, G. A.; Salvador, P.; Dannenberg, J. J.; Dapprich, S.; Daniels, A. D.; Farkas, O.; Foresman, J. B.; Ortiz, J. V.; Cioslowski, J.; Fox, D. J. Gaussian 09, Revision D. 01. Gaussian, Inc., Wallingford CT 2013.
Tang, L.; Shi, R.; Su, Y.; Zhao. J. J. Structures, stabilities and spectra properties of fused CH4 endohedral water cage (CH4)m(H2O)n clusters from DFT-D methods. J. Phys. Chem. A 2015, 119, 10971−10979.
doi: 10.1021/acs.jpca.5b08073
Yuan, D.; Li, Y.; Ni, Z.; Pulay, P.; Li, W.; Li, S. Benchmark relative energies for large water clusters with the generalized energy-based fragmentation method. J. Chem. Theory. Comput. 2017, 13, 2696−2704.
doi: 10.1021/acs.jctc.7b00284
Mcdonald, S.; Ojamae, L.; Singer, S. J. Graph theoretical generation and analysis of hydrogen-bonded structures with applications to the neutral and protonated water cube and dodecahedral clusters. J. Phys. Chem. A 1998, 102, 2824−2832.
doi: 10.1021/jp9803539
Kirov, M. V. Atlas of optimal proton configurations of water clusters in the form of gas hydrate cavities. J. Struct. Chem. 2002, 43, 790−797.
doi: 10.1023/A:1022825324222
Yoo, S.; Kirov, M. V.; Xantheas, S. S. Low-energy networks of the T-cage (H2O)24, cluster and their use in constructing periodic unit cells of the structure I (SI) hydrate lattice. J. Am. Chem. Soc. 2009, 131, 7564−7566.
doi: 10.1021/ja9011222
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